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Journal Articles

Raya Khanin and Ernst Wit. Design of large time-course microarray experiments with two channels. Applied bioinformatics, 4(4):253–261, 2005.   bib
M. Sperrin, T. Jaki, and E. Wit. Probabilistic relabelling strategies for the label switching problem in Bayesian mixture models. Statistics and Computing, 20(3):357–366, 2010.   bib
N. Friel, AN Pettitt, R. Reeves, and E. Wit. Bayesian inference in hidden Markov random fields for binary data defined on large lattices. Journal of Computational and Graphical Statistics, 18(2):243–261, 2009.   bib
V Purutcuoglu and E Wit. Bayesian inference for the MAPKERK pathway by considering the dependency of the kinetic parameters. Bayesian Analysis, 3(4):851–886, 2008.   bib
A Recchia, E Wit, and V Vinciotti. Computational inference of replication and transcription activator regulator activity in herpesvirus from gene expression data. IET Systems Biology, 2(6):385–396, 2008.   bib
F.L. Martin, M.J. German, E. Wit, T. Fearn, N. Ragavan, and H.M. Pollock. Identifying variables responsible for clustering in discriminant analysis of data from infrared microspectroscopy of a biological sample. Journal of Computational Biology, 14(9):1176–1184, 2007.   bib
R. Khanin and E. Wit. Construction of malaria gene expression network using partial correlations. Methods of Microarray Data Analysis V, 2007.   bib
R. Khanin , V. Vinciotti, V. Mersinias , C.P. Smith , and E. Wit. Statistical Reconstruction of Transcription Factor Activity Using Michaelis–Menten Kinetics. Biometrics, 63(3):816–823, 2007.   bib
V. Purutcuoglu and E. Wit. FGX: a frequentist gene expression index for Affymetrix arrays. Biostatistics, 8(2):433, 2007.   bib
V. Purutçuoglu and E. Wit. Exact and approximate stochastic simulations of the MAPK pathway and comparisons of simulations’ results. Journal of Integrative Bioinformatics, 3(2):853, 2006.   bib
E. Wit, V. Purutcuoglu, L. O’Donovan, and X. Zhu. SECTION I: MICROARRAY TECHNOLOGY-4. GAINING WEIGHTS AND FEELING GOOD ABOUT IT!. Advances in Experimental Medicine and Biology, 593:31–38, 2006.   bib
E. Wit, R. Khanin, and V. Vinciotti. Reconstructing repressor protein levels from expression of gene targets in E. Coli.. Proceedings of the National Academy of Sciences, 103(49):18592–18596, 2006.   bib
R. Khanin and E. Wit. How scale-free are biological networks. Journal of Computational Biology, 13(3):810–818, 2006.   bib
R. Khanin and E. Wit. Design of large time-course microarray experiments with two channels. Applied Bioinformatics, 4(4):253–261, 2005.   bib
R. Khanin, V. Vinciotti, V. Mersinias, C. Smith, and E. Wit. Computational inference of regulator activity in a single input motif from gene expression data. BMC Bioinformatics, 6(Suppl 3):S7, 2005.   bib
D.J. Bakewell and E. Wit. Weighted analysis of microarray gene expression using maximum-likelihood. Bioinformatics, 21(6):723, 2005.   bib
E. Wit, A. Nobile, and R. Khanin. Near-optimal designs for dual channel microarray studies. Journal of the Royal Statistical Society: Series C (Applied Statistics), 54(5):817–830, 2005.   bib
M. Fluck, C. Dapp, S. Schmutz, E. Wit, and H. Hoppeler. Transcriptional profiling of tissue plasticity: role of shifts in gene expression and technical limitations. Journal of applied physiology, 99(2):397, 2005.   bib
J.L. Dennis, T.R. Hvidsten, E.C. Wit, J. Komorowski, A.K. Bell, I. Downie, J. Mooney, C. Verbeke, C. Bellamy, W.N. Keith, and others. Markers of adenocarcinoma characteristic of the site of origin: development of a diagnostic algorithm. Clinical cancer research, 11(10):3766, 2005.   bib
J. McClure and E. Wit. Post-normalization quality assessment visualization of microarray data. Comparative and functional genomics, 4(5):460–467, 2003.   bib
E. Wit and J. McClure. Statistical adjustment of signal censoring in gene expression experiments. Bioinformatics, 19(9):1055, 2003.   bib
E. Wit. Who wants to be... The use of a personal response system in statistics teaching. MSOR Connections, 3(2):14–20, 2003.   bib
J.L. Dennis, J.K. Vass, E.C. Wit, W.N. Keith, and K.A. Oien. Identification from public data of molecular markers of adenocarcinoma characteristic of the site of origin. Cancer research, 62(21):5999, 2002.   bib
E.J.C. Wit. The categorical imperative: extendibility considerations for statistical models., 2000.   bib
M. Haas, B.H. Spargo, E.J.C. Wit, and S.M. Meehan. Etiologies and outcome of acute renal insufficiency in older adults: a renal biopsy study of 259 cases. American Journal of Kidney Diseases, 35(3):433–447, 2000.   bib
M. Haas, S.M. Meehan, M.A. Josephson, E.J.C. Wit, E.S. Woodle, and J.R. Thistlethwaite. Smooth muscle-specific actin levels in the urine of renal transplant recipients: Correlation with cyclosporine or tacrolimus nephrotoxicity. American Journal of Kidney Diseases, 34(1):69–84, 1999.   bib