## Publications by Ernst Wit

E.C. Wit, V. Vinciotti, and V. Purutçuoglu (2011) Statistics for Genetical Networks. Chapman & Hall, CRC Press, 2011.
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M. Sperrin, T. Jaki, and E. Wit. Probabilistic relabelling strategies for the label switching problem in Bayesian mixture models. Statistics and Computing, 20(3):357–366, 2010.
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L Augugliaro, AM Mineo, and E Wit. A differential geometric approach to sparse high-dimensional GLMs. Technical report, University of Palermo, 2010.
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N. Friel, AN Pettitt, R. Reeves, and E. Wit. Bayesian inference in hidden Markov random fields for binary data defined on large lattices. Journal of Computational and Graphical Statistics, 18(2):243–261, 2009.
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A Recchia, E Wit, and V Vinciotti. Computational inference of replication and transcription activator regulator activity in herpesvirus from gene expression data. IET Systems Biology, 2(6):385–396, 2008.
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Y. Fang and E. Wit. Test the Overall Significance of p-values by Using Joint Tail Probability of Ordered p-values as Test Statistic., 2008.
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V Purutcuoglu and E Wit. Bayesian inference for the MAPKERK pathway by considering the dependency of the kinetic parameters. Bayesian Analysis, 3(4):851–886, 2008.
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V. Purutcuoglu and E. Wit. FGX: a frequentist gene expression index for Affymetrix arrays. Biostatistics, 8(2):433, 2007.
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R. Khanin , V. Vinciotti, V. Mersinias , C.P. Smith , and E. Wit. Statistical Reconstruction of Transcription Factor Activity Using Michaelis–Menten Kinetics. Biometrics, 63(3):816–823, 2007.
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F.L. Martin, M.J. German, E. Wit, T. Fearn, N. Ragavan, and H.M. Pollock. Identifying variables responsible for clustering in discriminant analysis of data from infrared microspectroscopy of a biological sample. Journal of Computational Biology, 14(9):1176–1184, 2007.
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R. Khanin and E. Wit. Construction of malaria gene expression network using partial correlations. Methods of Microarray Data Analysis V, 2007.
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E. Wit, V. Purutcuoglu, L. O’Donovan, and X. Zhu. SECTION I: MICROARRAY TECHNOLOGY-4. GAINING WEIGHTS AND FEELING GOOD ABOUT IT!. Advances in Experimental Medicine and Biology, 593:31–38, 2006.
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V. Purutçuoglu and E. Wit. Exact and approximate stochastic simulations of the MAPK pathway and comparisons of simulations’ results. Journal of Integrative Bioinformatics, 3(2):853, 2006.
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E. Wit, R. Khanin, and V. Vinciotti. Reconstructing repressor protein levels from expression of gene targets in E. Coli.. Proceedings of the National Academy of Sciences, 103(49):18592–18596, 2006.
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R. Khanin and E. Wit. How scale-free are biological networks. Journal of Computational Biology, 13(3):810–818, 2006.
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E. Wit, A. Nobile, and R. Khanin. Near-optimal designs for dual channel microarray studies. Journal of the Royal Statistical Society: Series C (Applied Statistics), 54(5):817–830, 2005.
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R. Khanin and E. Wit. Design of large time-course microarray experiments with two channels. Applied Bioinformatics, 4(4):253–261, 2005.
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J.L. Dennis, T.R. Hvidsten, E.C. Wit, J. Komorowski, A.K. Bell, I. Downie, J. Mooney, C. Verbeke, C. Bellamy, W.N. Keith, and others. Markers of adenocarcinoma characteristic of the site of origin: development of a diagnostic algorithm. Clinical cancer research, 11(10):3766, 2005.
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M. Fluck, C. Dapp, S. Schmutz, E. Wit, and H. Hoppeler. Transcriptional profiling of tissue plasticity: role of shifts in gene expression and technical limitations. Journal of applied physiology, 99(2):397, 2005.
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D.J. Bakewell and E. Wit. Weighted analysis of microarray gene expression using maximum-likelihood. Bioinformatics, 21(6):723, 2005.
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Raya Khanin and Ernst Wit. Design of large time-course microarray experiments with two channels. Applied bioinformatics, 4(4):253–261, 2005.
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R. Khanin, V. Vinciotti, V. Mersinias, C. Smith, and E. Wit. Computational inference of regulator activity in a single input motif from gene expression data. BMC Bioinformatics, 6(Suppl 3):S7, 2005.
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E. Wit and J.D. McClure (2004) Statistics for microarrays: design, analysis, and inference. Wiley, 2004.
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E. Wit. Who wants to be... The use of a personal response system in statistics teaching. MSOR Connections, 3(2):14–20, 2003.
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E. Wit and J. McClure. Statistical adjustment of signal censoring in gene expression experiments. Bioinformatics, 19(9):1055, 2003.
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J. McClure and E. Wit. Post-normalization quality assessment visualization of microarray data. Comparative and functional genomics, 4(5):460–467, 2003.
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J.L. Dennis, J.K. Vass, E.C. Wit, W.N. Keith, and K.A. Oien. Identification from public data of molecular markers of adenocarcinoma characteristic of the site of origin. Cancer research, 62(21):5999, 2002.
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E. Wit and P. McCullagh. Extendibility of Statistical Models. In Algebraic Methods in Statistics and Probability, pages 327–340. . American Mathematical Society, 2001.
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M. Haas, B.H. Spargo, E.J.C. Wit, and S.M. Meehan. Etiologies and outcome of acute renal insufficiency in older adults: a renal biopsy study of 259 cases. American Journal of Kidney Diseases, 35(3):433–447, 2000.
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E.J.C. Wit. The categorical imperative: extendibility considerations for statistical models., 2000.
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M. Haas, S.M. Meehan, M.A. Josephson, E.J.C. Wit, E.S. Woodle, and J.R. Thistlethwaite. Smooth muscle-specific actin levels in the urine of renal transplant recipients: Correlation with cyclosporine or tacrolimus nephrotoxicity. American Journal of Kidney Diseases, 34(1):69–84, 1999.
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