Software for Statistical Analysis of Microarrays

Software for Statistical Analysis of Microarrays
University of Liverpool, Lancaster University, University of Groningen

Last update: 19 September 2008
Normalisation and R-Web
On-line Microarray Normalisation
What is RWeb?
Download R for free

This page describes briefly current microarray software developed by people in or associated with the University of Liverpool, Lancaster University and the University of Groningen.

(September 2008) [David Bakewell] "Likelihood ratio test for differentially expressed pathways" -- David Bakewell and Ernst Wit [RESUBMITTED TO BIOINFORMATICS]
Zip file with relevant Matlab code
README FILE
Derivation of the Bartlett Correction [PDF]

(May 2004) [Ernst Wit and John McClure]:
preliminary version of SMIDA R-library for Windows.
preliminary version of SMIDA R-library for Unix

(April 2004) [David Bakewell]: ZIP file with Matlab simulations and Matlab scripts to calculate a weighted estimate of the expression coefficient.. Associated with Bakewell & Wit, "Weighted analysis of microarray gene expression using maximum likelihood," Bioinformatics, 2005, Vol 21(6), p.723-9.

(April 2002) [Ernst Wit]: S-Plus 2000 script for calculating the MLE of any censored two-parameter pixel model. (or in text format.) Associated with Wit & McClure, "Statistical Adjustment of Signal Censoring in Gene Expression Experiments," Bioinformatics, 19:9, p.1055-1060, 2003.

(November 2001) Keith Vass and Ernst Wit: On-line Microarray Normalisation

Datasets, Papers, Conferences, Schedule, Minutes, People, Home.

		Software for Statistical Analysis of Microarrays University of Liverpool, Lancaster University, University of Groningen
	Last update: 19 September 2008 Normalisation and R-Web On-line Microarray Normalisation What is RWeb? Download R for free	This page describes briefly current microarray software developed by people in or associated with the University of Liverpool, Lancaster University and the University of Groningen. (September 2008) [David Bakewell] "Likelihood ratio test for differentially expressed pathways" -- David Bakewell and Ernst Wit [RESUBMITTED TO BIOINFORMATICS] Zip file with relevant Matlab code README FILE Derivation of the Bartlett Correction [PDF] (May 2004) [Ernst Wit and John McClure]: preliminary version of SMIDA R-library for Windows. preliminary version of SMIDA R-library for Unix (April 2004) [David Bakewell]: ZIP file with Matlab simulations and Matlab scripts to calculate a weighted estimate of the expression coefficient.. Associated with Bakewell & Wit, "Weighted analysis of microarray gene expression using maximum likelihood," Bioinformatics, 2005, Vol 21(6), p.723-9. (April 2002) [Ernst Wit]: S-Plus 2000 script for calculating the MLE of any censored two-parameter pixel model. (or in text format.) Associated with Wit & McClure, "Statistical Adjustment of Signal Censoring in Gene Expression Experiments," Bioinformatics, 19:9, p.1055-1060, 2003. (November 2001) Keith Vass and Ernst Wit: On-line Microarray Normalisation Datasets, Papers, Conferences, Schedule, Minutes, People, Home.